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View Structure Prediction Details

Protein: odr-4
Organism: Caenorhabditis elegans
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for odr-4.

Description E-value Query
Range
Subject
Range
odr-4 - status:Confirmed UniProt:Q8I7F8 protein_id:AAN84808.1
597.0 [0..1] [473..1]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRNRRKSKT TATSHPELHL EKVDPMKTES MILFDVQLQE WVTKSAKNHE FVLSDKGIPA  60
   61 SAYFLLGSFC SDGDIHVAYA SKCPVHSSAL EENATESSKM LEDEWMSDHA ERLLRMLPGG 120
  121 IHVVGIAWFS DKKTFSDRKS HIHKTLGRIQ KMNNQI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [157-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTANVDDSIS DNMITVFFET PSTTPIGAII DVTNRGNDSA QKVQFQKLEW ISLVTNASAR  60
   61 IVHNVPVDTG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [227-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPTDFYSDLV VATKNFVNNL FQCEFTLLDG EIRDDKEPLI KDIKKNKKTT IEAQLFLNPL  60
   61 YNRELGAIDD IASNMHEVLF DIEVRAAVPI RSTVKDAIRA IKHHLVRNLF ARVELHYESM 120
  121 EVVEEERSPK TGITVHQLPR PATTVLYTHP AILINDFLFE ADNVEDAQKN FDDMMDLQTS 180
  181 IEHVDEGWER ALTPEEMEAV RTPIEDLHFV DFDGSSDSWC TTKTILITIA LIIGLLASII 240
  241 YFTVAHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle