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View Structure Prediction Details

Protein: CE32948
Organism: Caenorhabditis elegans
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32948.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
268.0 [0..4] [468..1401]

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Predicted Domain #1
Region A:
Residues: [1-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAQAPDEK FQIPTISMSK MDFDDVPSKE DGNDSESDTD MVTDRKAIVI ASLVMFIAAI  60
   61 ENTVVGMSEW PYMNQIDKEA DAQFFGNATA ASKLFHAISA LVFAIWCHRF QSFQIPLIAG 120
  121 RFIAFGACLL YLCVEMFGSG RRYVMALCYI LFGVASSSST ILRAYVAAIS RHEDRPQAYS 180
  181 GLNAATMISI IVGPIIQAAF SSIHYPGWEI FPNVKFHIYS APVWVAAATN FISITIIKCC 240
  241 LKELPRRAKS DMKKNQSFLT IAGVKSRIEK VSQMNLNWRI VVLCWIQKMN ATLSVVTLTT 300
  301 LTSVIFMTNY GWSGAKTVLA MSITLGAVGI LAVIVAGLYF FCNLGNFLQQ RIAFLIGLVI 360
  361 FMSMYVFTYP WTPVSNPVPP YNALADVGCN STTYSWCDTS YAPAAPLLLI VIAVVMGIGI 420
  421 PLSSVALDAI YSKTLGPINQ SVMQGAMIVA EDVILILGPI YSSGVYTYSG FETLWTINGI 480
  481 VVALGSIYWI ANFSRLRQYS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle