YRC Public Data Repository - Protein Structure Prediction

Protein:	acdh-1
Organism:	Caenorhabditis elegans
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acdh-1.

Description	E-value	Query Range	Subject Range
gi\|221087039, gi... - gi\|221087039\|ref\|ZP_03556579.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC61], gi... gi\|229331248, gi... - gi\|229497822\|ref\|ZP_04391521.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC52], gi... gi\|56381770, gi\|... - gi\|56421928\|ref\|YP_149246.1\| acyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381770\|d...	328.0	[0..2]	[252..52]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVHVPEEYG GSGSSFFNAM IVIEELAKTD PSVSAMVGIH NTLPVSMIID YGTEEQKLKY  60
   61 LPRLCSDSLA SFCISESGAG SDAFALKTIA KRDGDHFLIS GTKMWITNSG EAQVFVVFAN 120
  121 ADPSQKYKGI TCFIVERSAD GLTVDKEEDK LGIRASSTCQ VHFDNVRVHK SAILGEYGKG 180
  181 YKYAIECLNA GRIAIGAQMI GLAQGCFDQT IPYLQQREQF GQRLIDFQVI FEIGFEFLIH 240
  241 KCSGFTTSDC TS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	2jifA
Description:	No description for 2jifA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits