YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ooc-3
Organism: Caenorhabditis elegans
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ooc-3.

Description E-value Query
Range
Subject
Range
ooc-3 - status:Confirmed UniProt:Q9XVW6 protein_id:CAA91380.1
859.0 [0..1] [446..1]

Back

Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIWVTLLL LVPQLFATQD IDEEFTHENV WKDPNDPTSG ESPPASKRLL SVRNQVQKPD  60
   61 QSLRLILRQL LHETKIDYHL EGSIKKDVQI KISRHSMSVL SKYLKNDEAD LAEEREAVRS 120
  121 ALSNIFSVKP PAPDRTWQDT FVTLQPFIFT LNIFILPAAA FVVLRSIVRP RNFWILVLST 180
  181 ALLVSMYSGY SKKYQEAESR RFAQFQEHAH 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.619789
Match: PF00616.10
Description: No description for PF00616.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [211-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSCATEGLLS RMVEILASPF QYRQKSKCLK YIESQTISIF HEISIIEVFS ETISGGFFAF  60
   61 FSGSAKHFNL FFRNLYDGAP LIAQIVMTIF LVLMLGAIRT PFFSYEPIWL NFCSSSIGKI 120
  121 AGWLDGEPPQ QPAPQLLITA KEMKRLEQAR NKKPEMISYP TSEREDVVSG SENGNEKKSD 180
  181 NEREESMKME EDSAPVESSL EDDLSLLGES SEDEDEEKVN ESPAKIDSTT LSESSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle