| Protein: | shk-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 501 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shk-1.
| Description | E-value | Query Range |
Subject Range |
|
|
303.0 | [0..68] | [498..5] |
|
Region A: Residues: [1-501] |
1 11 21 31 41 51
| | | | | |
1 MIDSLIRRLE QVLNVHPEKY QNGCSSQRPS RQPSPVEQLA PIRSHSADFG RAAEMASGNS 60
61 EEGKGMLLRN GDDRIRLPSP QRGTPDTSST QGHPYTDQIV TINVSGMRFQ TFESTLSRYP 120
121 NSLLGDRNKR QHFFVSDTNE FFFDRHRTTS SSFTFEIRNY LFESILYIYQ SGGRVKRPEI 180
181 VPIDIFLKEM RFFQMGDDLL EEFWIAEGYE KPKEVMMPNN KTQRKIWELM EYPDSSLSAR 240
241 IIAFISIAVI ALSIISFCWE TVPSDIEEKP INNSATAELL DEMDEKHYSP FFWIELMCIL 300
301 WFTIELILRF ISCPCKVTFA TSVLNIIDFV AIAPFFVNFF FADTSKSNSS MSFAVLRVLR 360
361 LVRVFRVFKL SRHSVGLQIL GKTFRSSVQE FCLLIFFMAI ALVLFASGMY FAEQGEPNSK 420
421 FTSIPASFWF VLVTMTTVGY GDLVPLSPFG KVVGGMCAMI GVLTLALPVP IIVANFKHFY 480
481 RQENRLASMK SKGDDADDDI A
|
| Detection Method: |  |
| Confidence: | 79.045757 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
