| Protein: | shk-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 481 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shk-1.
| Description | E-value | Query Range |
Subject Range |
|
|
329.0 | [0..1] | [475..16] |
|
Region A: Residues: [1-481] |
1 11 21 31 41 51
| | | | | |
1 MRFGGQRRCI ESSDDNDSID SMSIQQKNKE KEEWKWAQSL ASRAAEMASG NSEEGKGMLL 60
61 RNGDDRIRLP SPQRGTPDTS STQGHPYTDQ IVTINVSGMR FQTFESTLSR YPNSLLGDRN 120
121 KRQHFFVSDT NEFFFDRHRT TFESILYIYQ SGGRVKRPEI VPIDIFLKEM RFFQMGDDLL 180
181 EEFWIAEGYE KPKEVMMPNN KTQRKIWELM EYPDSSLSAR IIAFISIAVI ALSIISFCWE 240
241 TVPSDIEEKP INNSATAELL DEMDEKHYSP FFWIELMCIL WFTIELILRF ISCPCKVTFA 300
301 TSVLNIIDFV AIAPFFVNFF FADTSKSNSS MSFAVLRVLR LVRVFRVFKL SRHSVGLQIL 360
361 GKTFRSSVQE FCLLIFFMAI ALVLFASGMY FAEQGEPNSK FTSIPASFWF VLVTMTTVGY 420
421 GDLVPLSPFG KVVGGMCAMI GVLTLALPVP IIVANFKHFY RQENRLASMK SKGDDADDDI 480
481 A
|
| Detection Method: |  |
| Confidence: | 83.0 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
