YRC Public Data Repository - Protein Structure Prediction

Protein:	brc-2
Organism:	Caenorhabditis elegans
Length:	394 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for brc-2.

Description	E-value	Query Range	Subject Range
gi\|39591745, gi\|... - gi\|39591745\|emb\|CAE71323.1\| Hypothetical protein CBG18220 [Caenorhabditis briggsae], gi\|187025240\|em... gi\|157775523 - gi\|157775523\|ref\|XP_001665827.1\| hypothetical protein CBG18220 [Caenorhabditis briggsae AF16]	511.0	[0..82]	[381..2]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSSKKVKD SFDTISEPDS FDEPKGVPIS MEPVFSTAAG IRIDVKQESI DKSKKMLNSD  60
   61 LKSKSSSKGG FSSPLVRKNN GSSAFVSPFR REGTSSTTTK RPASGGFEDF EAPPAKKSTS 120
  121 SSSKKSKKHS KKEKKKEFKE IHADVLRVSR IYEKDKFRII LQESSSTPLI LATCSYNRGS 180
  181 DIKFGDRIHV DAEVCKKSSS GDVTEIYIDR VLKNKENGAK SGIRRHSIAK K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [232-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFCIKPRFIH ELSDTKIKKT VVQVNLLDLN LDFYAGCSKC KHSLPEAANQ CEFCKDSQGK  60
   61 SELSMYSRVR VMDFSGQMFI NVTTKNMKKL LDLLGYEGFD NWFRFKDPQE RQNYVFRPVM 120
  121 VEIEKSNDEW ECTDVAEVDW KDFGSYLKHK EDKKKRRSKK KHP