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View Structure Prediction Details

Protein: CE32671
Organism: Caenorhabditis elegans
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32671.

Description E-value Query
Range
Subject
Range
gi|27960469 - gi|27960469|gb|AAO27840.1|AF408761_1 Rap1GAP [Caenorhabditis elegans]
468.0 [0..1] [376..366]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHVSTMLPY TIGDAQQLQR KRHIGNDIVA IIFQEANTPF APDMIASNFL HAYVVVQPID  60
   61 ALTDRVRYRV SVAARDDVPF FGPTLPTPSI FKRGQDFRNF LLTKLINAEN AAYKSSKFAK 120
  121 LAERTRSSLL DGLHATLRER AEFYATPLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.09691
Match: 1srqA
Description: Crystal Structure of the Rap1GAP catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [150-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESTSSGGESA ATTSSSSNSY GGGILSSVKK AFIGRSRSVS QEASHVPHRA ATINVTSRPK  60
   61 KSISSTSSST SARTHSPIRD EEVVKPYRKE WEISSQESPD NEHDSDTGME SMSSTEMSGQ 120
  121 TRASSCTFC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [279-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDDFHVAANH QSSDAKRLET LCVDVTRLQN EKHDLLRQNV SCKTDIKKLK DRQSVLSEEL  60
   61 ERANDEISRL RRMLKKPSNS DMAPVHQHFE RSYSDVSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle