| Protein: | lir-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 251 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lir-1.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..11] | [251..2574] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MPKFVVIELN DDAATIDLLS YCVKKNFERV SLLTRLEDHP YLRDDQDVVQ DDTQSQGTDG 60
61 MLLQLNDEER QRLMKMISTP
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.414217765611205 | bayes_pls_golite062009 |
|
Region A: Residues: [81-251] |
1 11 21 31 41 51
| | | | | |
1 GPQTLSMERI QMAPGQGQHI LQQHQIPSTS SYTNNSFIYI KSDPQYKDEP QQQSNQFDAT 60
61 VNSVAHGQAG LSTLEMFACN GSPNGGDVLR RKTPSRKAED SIKATCKVCG HDVMYSPQRT 120
121 WNLMRHVWIM HQSSKPNQCS ICGYSHIKPY VRKHIESQHK HDSNATIIDL K
|
| Detection Method: | |
| Confidence: | 49.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
