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View Structure Prediction Details

Protein: ncx-2
Organism: Caenorhabditis elegans
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ncx-2.

Description E-value Query
Range
Subject
Range
gi|51593409, gi|... - gi|74138532|dbj|BAE38073.1| unnamed protein product [Mus musculus], gi|51593409|gb|AAH80862.1| Slc8a...
309.0 [0..2] [405..449]

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Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEGEIVFED NQTEALVEIG IVDTEQYERS DYFYIELSPP IWAKKMNDLS RIQE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.54
Match: 2fwuA
Description: No description for 2fwuA was found.

Predicted Domain #2
Region A:
Residues: [55-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFQRRMERKR GSSVASESKD SNTENALAPA EKSTRAASVD LLQPSSDPRR SSQTNSPHLT  60
   61 SRFRNRLGSW IAGMKGGNGD DEVTTSLTPS QLEIAEMGKP RLGEFTKCQI TIRESKEFQG 120
  121 IVDRMIKNAN TRIMLGTHSW REQFMEALVV SAGDDDDDEG ED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 2fwuA
Description: No description for 2fwuA was found.

Predicted Domain #3
Region A:
Residues: [217-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEDGEEKEPE EPGCMDYVMH VLTVPWKLTF ATIPPTDYFG GWATFVVAIF MIGVLTAVVG  60
   61 DLASQFGCWV GLKDAVTAIS FVALGTSVPD TFASKVSAVQ DKYADNAVGN VTGSNAVNVF 120
  121 LGIGIAWSMA AIYHWNQGTK FLVDPGNLGF SVLIFCTEAV LCIIVLVLRR NKKVGGELGG 180
  181 PIALRVRFF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.366532
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle