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View Structure Prediction Details

Protein: fbxa-40
Organism: Caenorhabditis elegans
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-40.

Description E-value Query
Range
Subject
Range
fbxa-60 - status:Partially_confirmed UniProt:Q9TZ26 protein_id:AAC68934.1
255.0 [0..4] [339..25]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGNCLKAVA TRFLKLSNFK QRPNLQNEGV MSSNLLDMPL DVINVVMGKL EPMDLLRLRK  60
   61 VCHSLKSAVN KFGIHFDSIH FELHDHSITL CLDNGFPIYI RAVYGGTTVS YG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRTIEIEEEN FMDVGFKDLK FLLKHVSTLG IYNYAKNRKE IIKSFIDFLK PEECFPVDAV  60
   61 EIWNFSFNDV VSFLSYFDDK TLKSIKLNQN EPIEQFEPIT YLDQWTNAKH FGLKATNSNV 120
  121 DSEIIKNLFH FPHFCVYKIT DFPTQLAVKI RDNLMRRSTF QQCTLSVNKL TLNPIEIARI 180
  181 FKSDYTGDIS RIPESAQMSS PDSSQSKKAV GSHPSARSVF PSMDSSVFTD 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 58.744727
Match: PF01827.18
Description: No description for PF01827.18 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [343-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDGCEILHST AKTCAPPDPC FPTSPFFCVE SPDVTDLSPD KPVEDILKLG TTHTHSLSLS  60
   61 SLSLLVVSSA SLPGRAGYIT ENTSKASMPQ SVAGCLAKEK DDSSTPMCAL FFCLFCFTYY 120
  121 FGFPKSTKSR SGK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2p4eP
Description: No description for 2p4eP was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle