YRC Public Data Repository - Protein Structure Prediction

Protein:	acbp-3
Organism:	Caenorhabditis elegans
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acbp-3.

Description	E-value	Query Range	Subject Range
gi\|157768592 - gi\|157768592\|ref\|XP_001676117.1\| Hypothetical protein CBG17558 [Caenorhabditis briggsae AF16] gi\|39594930, gi\|... - gi\|39594930\|emb\|CAE70798.1\| Hypothetical protein CBG17558 [Caenorhabditis briggsae], gi\|187025711\|em...	147.0	[0..1]	[116..1]
gi\|109505315 - gi\|109505315\|ref\|XP_225630.4\| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5 [Rat...	142.0	[0..3]	[105..278]
ACBD5_XENTR - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1	142.0	[0..4]	[105..9]
gi\|125984784, gi... - gi\|54644475\|gb\|EAL33216.1\| GA21340-PA [Drosophila pseudoobscura], gi\|125984784\|ref\|XP_001356156.1\| G...	141.0	[0..2]	[111..3]
ACBD5_XENLA - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis GN=acbd5 PE=2 SV=1	141.0	[0..4]	[105..9]
gi\|110778047 - gi\|110778047\|ref\|XP_001122639.1\| PREDICTED: similar to CG8814-PA [Apis mellifera]	141.0	[0..1]	[105..1]
gi\|148676201, gi... - gi\|23273374\|gb\|AAH35202.1\| Acbd5 protein [Mus musculus], gi\|148676201\|gb\|EDL08148.1\| acyl-Coenzyme A...	140.0	[0..3]	[105..86]
ACBD5_CHICK - Acyl-CoA-binding domain-containing protein 5 OS=Gallus gallus GN=ACBD5 PE=2 SV=1	140.0	[0..6]	[105..11]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQEKFDAA VEIIQKLPKT GPVATSNDQK LTFYSLFKQA SIGDVNTDRP GIFSIIERKK  60
   61 WDSWKELEGV SQDEAKERYI KALNDMFDKI AEELDVAAWL EQIDPVIKTN LALIGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2fj9A
Description:	No description for 2fj9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits