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View Structure Prediction Details

Protein: CE32377
Organism: Caenorhabditis elegans
Length: 543 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32377.

Description E-value Query
Range
Subject
Range
CE32376 - status:Partially_confirmed UniProt:Q8I0I3 protein_id:CAD56576.1
358.0 [0..1] [543..47]

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Predicted Domain #1
Region A:
Residues: [1-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLSIHEDD TSMSSSERTI ERGFSRYGRK RSSVRMLLDE VNMTDRKTSW MDTEHRVILN  60
   61 VGGIRHETYS HVLKKIPATR LSRLTPNLAN YDPVLNEYFF DRHPGVFSMI LNYYRTGKLH 120
  121 YPTNVCGPLF EEELEFWGLD ANQVEPCCWM TYTQHRDTQD TLAVIESLDL DGDPPTQEEI 180
  181 AKKFGWEDDY YTGNMSQWQR LKPRVWALFD EPWSSKYARV ISSLSVAFIL ASTCSFILKT 240
  241 DPSFQIPDID VFYSLRVVDE GGFKNYHKTI GTDKPVTSPH PNFFYVDLIC NIWFTIELLI 300
  301 RSLFCPSFHK FVRSPLTIID VISTGAFFFE SLLHAILIQT GSLVTLDFLS MICVLRLFKL 360
  361 TQHFSGLKIL IQTFKASAQE LFLLVFFVIL AIVIFAALVY YAERSQLNKD NQFTSIPLGL 420
  421 WWSLVTISTV GFGDMVPKTY LGMLVGSLCA LMGVLTIALP VPVIVSNFSN LYSHSQARAK 480
  481 LPKKRRRVLQ AHEVKPALLG VKQHHGKHRK KSSSATFNQP PANFKNANGG PSMHDNSASK 540
  541 LMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.221849
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle