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View Structure Prediction Details

Protein: CE32268
Organism: Caenorhabditis elegans
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32268.

Description E-value Query
Range
Subject
Range
gi|115893463, gi... - gi|115930648|ref|XP_001178590.1| PREDICTED: similar to fibropellin Ib [Strongylocentrotus purpuratus...
290.0 [0..16] [334..1516]

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Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISSCLTAL FLFLPLLLAQ QPLKTQQQQQ QQKVDASVAK PGLHDILLKT VHDTASYLGF  60
   61 GVKCRNGGHK TEENTCICPK YYYGKECETK VCINGGKPEK SLVPTVHMVC KCPNPEFITG 120
  121 EHCEKIKCAN QGVLRVFPAN STWQCDCSET KFFGSTFCEK LIVSSLWSIV AGCILLLICV 180
  181 VCLCSANWFN RDRGRRRRHP TNRCMSTGDG TSGHSAGMRD TGRRAWPAQA QRGTRVNPRG 240
  241 GPSSSTHRSS SSDELISSER GAHRRTAAFP SGNITQQYVV RLDTIPTFNP AMIGGVEPTG 300
  301 APLQQDMGPP PSYDQAMSSI HAEPPVYTPT DAAKQNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1jv2B
Description: Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle