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View Structure Prediction Details

Protein: flh-2
Organism: Caenorhabditis elegans
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flh-2.

Description E-value Query
Range
Subject
Range
gi|187025227, gi... - gi|39591732|emb|CAE71310.1| Hypothetical protein CBG18201 [Caenorhabditis briggsae], gi|187025227|em...
gi|157775497 - gi|157775497|ref|XP_001665814.1| hypothetical protein CBG18201 [Caenorhabditis briggsae AF16]
633.0 [0..5] [467..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTMMNTNT DGVTAVPPIF PLPSTTPNRN NNNELAMLAQ KQIVAGLLLQ QPTIVQAAVN  60
   61 GTNSQKHLAD IDYTNVIQTL QALGTTNLKA FSLLLDPQSQ TSQLISEDTR PSASSSPSST 120
  121 ATAVSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGQSNATSTS SSSTEPEYKP RNVREKVYAD GYIMSFDKKS CCGTKEFWRC ERKNDCNARM  60
   61 HSDINTREIV RKLHPHNH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.552842
Match: PF04500.7
Description: No description for PF04500.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [205-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKPSPEELAF YEQDFSTLHP NYCHPVKSIN RSYMQRKLSR ASHVSQALPI APQQIKAEPM  60
   61 EVDTTNQTIQ NFQQNNNLML LASINAAATA AAAATSAGIS P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [306-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVVGQKRVST TVMPITLKSQ RTTPKEEEDS SQLMSQEEFR ITYELTKKLM EMMKPKTEIG  60
   61 VRWQGDEGSI LLFLSHDNGA EENVFFPVVV MNRDEKSLIT ALEGFTGKRC EGKLALCYSQ 120
  121 RVNVLVHEAL ISNWTHGKLF LVNTDAPALW RLTPVDAFGE PLNHV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle