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View Structure Prediction Details

Protein: npp-13
Organism: Caenorhabditis elegans
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-13.

Description E-value Query
Range
Subject
Range
gi|114662650 - gi|114662650|ref|XP_510982.2| PREDICTED: nucleoporin 93kDa [Pan troglodytes]
454.0 [0..11] [380..103]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFTEILGR VDHQGFAQLL ANPIFQTNRV GQENSQQFTV RNGVEQELCG ILGGSEGDWT  60
   61 RQTHSVQKQM MFGERGIELP SRQPKSHTAE DTLTDEGVVD VPEAVMDDID EEELDEDIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVKVETDRAF FNHMLLSRPA AVPMNPAQAM ERDNLPFGGG KFVNKNISDR RELIFGDKLH  60
   61 KFLKNQGKKS LVDLMKEAID ESGTDGALGD VWNDVTSVLN RKTSASRDDL TTTANLVEDA 120
  121 CKYLQAVFTE HMQTVVERNL EVAERGGIPG TRGLVNAFLK VGTEESFQPE DDSIDGMPTW 180
  181 QVTYHCVRAG DMKSASETLN RLKSFPQCAT LVAALNHVAK HGKLDSELKK KLKVEWRHNL 240
  241 AHTKDKYKRA IFYVKWTIGI SIFFHCSLAF WTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.0
Match: 2qx5A
Description: No description for 2qx5A was found.

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