| Protein: | CE31636 |
| Organism: | Caenorhabditis elegans |
| Length: | 490 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31636.
| Description | E-value | Query Range |
Subject Range |
|
|
280.0 | [0..5] | [471..679] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MTALILDSVV QADLDRVPGN TTMLRAETWR IIEQFSQSLP TPYSLSSPDN GIHIKSIEWL 60
61 PTTDENHVVR VVCTSNATLF ELLEPK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [87-163] |
1 11 21 31 41 51
| | | | | |
1 SPVLSIKPDS LEPFGTTRMS IYMRFPDIYD NYTCVYYDEE EKAWSTKGIR RIEHSYHGYV 60
61 KCETNHFGVF ALLPDRL
|
| Detection Method: | |
| Confidence: | 0.955 |
| Match: | 1biiA |
| Description: | Class I MHC, alpha-3 domain; Class I MHC, alpha-1 and alpha-2 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.366285148380371 | bayes_pls_golite062009 |
|
Region A: Residues: [164-490] |
1 11 21 31 41 51
| | | | | |
1 FYNSESFWKD LANHMPTVTS FVTLICTVLL LFMAAVQKNQ PIDCAFLFYL FFVFMIHLAH 60
61 LLLFLAPQVG EPFTFSTLLH FILQFCVIAS AGLLCLVTPS IFTFSTYYLL DGRDLDIARL 120
121 FERTDWLFIS NYLLPTAVLF SISVVYAIWN VYIASGTRTN RRCSSDRLLA LGPAISASVS 180
181 SLFMVFCFCS ALLLFFFREH SPMAIFFFCL FQFFHVVIAF FFASYLFRLR FLLQRGFDSN 240
241 DSTDSLERKR DISRALLEHV DTKSDITSKH VVVDGGFTEA GFTPATHYQY SPSEYIPPGS 300
301 MTQIDNNNRY LALQQNIFER APMVSIV
|
| Detection Method: | |
| Confidence: | 1.66 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
