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View Structure Prediction Details

Protein: ctn-1
Organism: Caenorhabditis elegans
Length: 750 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctn-1.

Description E-value Query
Range
Subject
Range
ctn-1 - status:Partially_confirmed UniProt:O76614 protein_id:AAL77189.1
425.0 [0..1] [730..1]

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Predicted Domain #1
Region A:
Residues: [1-750]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSNSVVPP FDARNLEIKT KSIEQTLIPL VTQITTLVNY KESYMASGKP KSERAMRAAL  60
   61 KIGSAVEAAI ERFVCVGETI ADENADIQPE MYDACTEARL AGASMANLSC ACNDDPNSVV 120
  121 DKAVLVRASR QLLSSVTRVL LLADRVLVKQ VLRAEDKIAF SLSRLESTRS FNDFVKVFAV 180
  181 FGGEMVELAH RSGDRQHDLK SEKRKAQMSI ARTSLERLTM LLLTASKTYL RHPDCDSALQ 240
  241 CRDGVFYQMK LSLELIAICV CDGILTTEKS RYIQDEPDMP IDIALQLTAN AAIKQLTEML 300
  301 EMIRMTVRVG AGVRERIVSA LDALCQLTQD FTDSAYTPHH QREQILDFLE ECRFEMTNLI 360
  361 QPDENEQLAA SGLEVTVERL NRRLKDLSKQ LQIVAMEQIS EVLRANEDQV LLSSMKACAV 420
  421 SGDIDGVEKY MHKFREHADH MQEVCRLLHH ISITDALHVH TGHVERNMRA LAPLTILAGR 480
  481 TLCVHPSSRI ARENLEVFCD TWGQAVNDLS RVAKESDVAA NGRVAAEKQA YMSLPRPGDQ 540
  541 QKMAKVGLEM KLLTSEVDAE AEKWDEYAEN DIVKRAKAMS SMAYNMYLFT RGDGPLKTTH 600
  601 DLFTQAEFFA EQANQMYRTV REFSYEVPGS AEKSDLSAIL ERIPLHCQQL QVMVKSPTVG 660
  661 KTATFGKVDS VIQETKNLMN EIAKLVTASF VCATKYEIEF RGGSVNGRTG ADGERTSRES 720
  721 TVWRRTPSIR RAAPPTSSHL SANNSSSIHI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 1st6A
Description: Crystal structure of a cytoskeletal protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.47862012796505 bayes_pls_golite062009
protein binding 2.02579891050608 bayes_pls_golite062009
cell adhesion molecule binding 1.07751635463993 bayes_pls_golite062009
cadherin binding 0.801778192092067 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle