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View Structure Prediction Details

Protein: CE32007
Organism: Caenorhabditis elegans
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32007.

Description E-value Query
Range
Subject
Range
gi|220946356, gi... - gi|220956054|gb|ACL90570.1| Cct1-PA [synthetic construct], gi|220946356|gb|ACL85721.1| Cct1-PA [synt...
Cct1-PA, Cct1-PD... - The gene CTP:phosphocholine cytidylyltransferase 1 is referred to in FlyBase by the symbol Dmel\Cct1...
229.0 [0..7] [270..166]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDDTLAFCS PAPFSDDVEV IKQREAIDYS TQITLEDAIS GNVTRPVRVY ADGVYDMFHY  60
   61 GHANQFLQIK QTLPNVYLIV GVCSDEETMK NKGRTVQGEE ERYEAIRHCR YVDEVYKASP 120
  121 WTCPIPFLKE LKVDFMSHDA LPYQGPAGED IYEKHRTAGM FLETQRTEGI STSDSICRII 180
  181 RDYDTYVRRN LQRGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1cozA
Description: CTP:glycerol-3-phosphate cytidylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.84668360172717 bayes_pls_golite062009
ligase activity 0.41353894226697 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.1911539125531 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.1911539125531 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.178548924377401 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [196-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SATDLNVGFF TTSKYRLQDT VVGIKEMGRG LLQTWKTNAD YLIEGFLTTF AISDPKPLPN  60
   61 NKSADENVEN RENIENF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle