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View Structure Prediction Details

Protein: lev-11
Organism: Caenorhabditis elegans
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lev-11.

Description E-value Query
Range
Subject
Range
gi|37403, gi|224906 - gi|37403|emb|CAA27243.1| unnamed protein product [Homo sapiens], gi|224906|prf||1203383A gene oncD
171.0 [0..15] [230..7]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVNKEGAQ QTSLLDVLKK KMRQAREEAE AAKDEADEVK RQLEEERKKR EDAEAEVAAL  60
   61 NRRIVLVEED LERTEDRLKT ATSKLEQATK AADEADRARK SMETRSQQDE ERANFLETQV 120
  121 DEAKVIAEDA DRKYEEVARK LAMVEADLER AEERAEAGEN KIVELEEELR VVGNNLKSLE 180
  181 VSEEKALQRE DSYEEQIRTV SSRLKEAETR AEFAERSVQK LQKEVDRLED ELLLEKERVR 240
  241 NLTEEIEQTV QEIQGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle