YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: rme-1
Organism: Caenorhabditis elegans
Length: 576 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rme-1.

Description E-value Query
Range
Subject
Range
gi|109105844 - gi|109105844|ref|XP_001118235.1| PREDICTED: EH-domain containing 1 [Macaca mulatta]
409.0 [0..9] [562..163]

Back

Predicted Domain #1
Region A:
Residues: [1-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLFEEGQK KKKTRSMFSW LGGDSSKKKN KEVLETVSEG LRKIYKQKLL PLEEFHKFHD  60
   61 FHSPALDDPD FDAKPMILLV GQYSTGKTTF IRYLLESDFP GIRIGPEPTT DRFIAVMHGD 120
  121 EEGSIPGNAL VVDAKKQFRA LSGFGNAFLN RFQCSTLPNQ VLESVTIVDT PGILSGEKQR 180
  181 IDRGYDFTGV LEWFAERVDR IILLFDAHKL DISDEFKRCI EALAGNEDKI RIVLNKSDMV 240
  241 DHQQLMRVYG ALMWSLGKVF KTPEVSRVYL GSFWDHPLHY DLNRRLFQDE QHDLFQDLQA 300
  301 LPRNAALRKL NDLIKRARLA KVHAYIIAEL RKQMPSMIGK DKKKKDLIQN LDKIYEQLQR 360
  361 EHNISPGDFP DVNKMREKLQ TQDFSKFNPL KPKLLEVVDG MLATDIARLM AQIPKEEAAA 420
  421 PAGSNGSADP TVRGGAFSQT TEAETPFGFG RYDARWGEGF DKGADEAEWV VSRERTTADS 480
  481 TFESLGPVNG YLSGRAAKEH MVKSKLPNSV LGKVWKLADI DKDGQLDADE FALANYLINL 540
  541 KLEGHEIPSE LPKHLIPPSK RGEQDPVYPS LNDNDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 2qptA
Description: No description for 2qptA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle