| Protein: | ram-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 711 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ram-5.
| Description | E-value | Query Range |
Subject Range |
|
|
472.0 | [0..1] | [711..1] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MQYSTKHVIG YIFSFVVLAT STDFDNAHVM GVPQVTCSAK LITVSFNTNI PFQGRISVFD 60
61 KLFIPACNHD YSTNIQKNAT FQMDILKCAN PMFLKNGSRL LRAYVEIGFH PLVMTNSDRT 120
121 FLVECLDN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [129-285] |
1 11 21 31 41 51
| | | | | |
1 TIMPIVNRAQ SFADCTHLVR MASEWSSMSE FQVGDAIVHE WSCKLPNPAK TQTFLTNCNA 60
61 LSQNGQIIHL IDENGCVIDS ELMGDIVYSD HVPKLYARAR IFKFLTDDKY RIECTLEFCN 120
121 NGSPCKDRVF PPKCAFTKEE ITSRSTKNQL EQSGMTT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [286-630] |
1 11 21 31 41 51
| | | | | |
1 MPGIPSSAYD SRLKISSAWL TIKLNQYTET KGLHPRYHLK TFLDPTLHET ISPNDADHFL 60
61 MGISYREPIP KLSSQSELSH PDNNRVEGAR ILHSSAFQPI ISPPIDSHEE FIETITFGSN 120
121 LNSEPIVNVQ KEMHLQKEPV HKVFTHKDPL KTEKTEKFMK LVQIENEDRN HGAALETTQQ 180
181 SRMFTTTMPS TMISTTTTPM TSSSRTDKLP SEHFNHPELD TFEKPKKSFE KSHSLVQMTE 240
241 TTTAPAANLK FYSTTASTKK LTPTTPYASA PPESSTQTPN STKPTSIRNV THSVPTVKKY 300
301 DKFVNNNADW RFDDKAINDS DIVSEKQTSA CYNATIISSQ RQCKW
|
| Detection Method: | |
| Confidence: | 1.01 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [631-711] |
1 11 21 31 41 51
| | | | | |
1 SGVEHLLLIW SFASLIVWMM LIALFLYRYS SRKPQWIGFR EQELRRVAQS RVLSQDHPWL 60
61 HADAFEERNQ SKNEIEINHF T
|
| Detection Method: | |
| Confidence: | 0.977 |
| Match: | 1mv3A |
| Description: | NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1: ALTERNATIVE SPLICING IN MELANOMA AND INTERACTION WITH C-MYC |
Matching Structure (courtesy of the PDB): |
|
