| Protein: | nhr-66 |
| Organism: | Caenorhabditis elegans |
| Length: | 577 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-66.
| Description | E-value | Query Range |
Subject Range |
|
|
345.0 | [0..2] | [573..353] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MPSGHVTTVD QQNRQQHQQQ QRQQQQAQQQ NSMARKYSMD TIQHHTMQHP HQLQYIPNHF 60
61 MTASTDVFAA MDMSQKQSSP PGIFKIAKNE PSSSSNSQPG TPA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-191] |
1 11 21 31 41 51
| | | | | |
1 MGDRRAVPAC AICGTDSTGI HFGVDACAAC SAFFRRTVVL NKDYSCNKGG KCTVVKDGSA 60
61 GQKCRACRFR KCISSGMDKN SVQHRRDA
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [192-577] |
1 11 21 31 41 51
| | | | | |
1 IGKYSAGVKR ELSPDAEFEP SAKVSTVSEP STSSGPSGGF NQNVSSPAGI PRVPSTLRTT 60
61 QASTCMNSAC GQKSVLHELI CRQNFLTEQR QLFYAGCLGD WFRKPSSIEN QTLSELTDFS 120
121 SCMFHLWKIE PRLAADFMNR NRYLDPLPIV EKLKIYRNFV IMRQSVEEPY LTWRHGGLEK 180
181 RWFVMPNNTY IDFNNIAKYF ENGALKDLKL DYETTTNLFL PSFTHAMDTI GEKMKKNNIT 240
241 ETELTILLGL VLLDPGIYGI HESTRKFLKR IRDQLIHDVY MYYEDEMSHL YDPEIRMADI 300
301 FMLVAAIKIH SIKTSENMHM LRVFDLIPAD ACFNQMLDVE SVNVSPDGQK DSEAEQGPSP 360
361 VSVPEAARGS YQDDDMPPVL EKNCDL
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 1z5xE |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
