| Protein: | pbo-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 783 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pbo-4.
| Description | E-value | Query Range |
Subject Range |
|
|
372.0 | [0..49] | [782..25] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MWIKLLFFFT TLLVSTSGLG DDGITALLDP NSTEFSTVLP SNNSEKFSYM LASVKNMNMT 60
61 ASEFEEFIKV LKHRQSKDHS GEHVGNEHDE SHGISVVSWH WDYVKNELVL TLFFIVIGLF 120
121 KLVYHHTFVT RKILPESCCL IFIGIAIGFF FVGDATHASI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-451] |
1 11 21 31 41 51
| | | | | |
1 KFLEFKSKVF FFYLLPPIIL ESAYSLKDRA FIENIGTILL YAVVGTILNI VLLAAALLIL 60
61 IWVGIMGKYN LSVMDILTFA SLVAAVDPVA VLAVFQEVGV NKMLYFMVFG ESLFNDAVTI 120
121 VCYNLAIEFQ TLPDFTWYHG FLGLLSFLCV SIGGLIIGLI CGAISSFVTK FTTDVRVVEP 180
181 VVLFGMAYLA YLGSEMFHFS GIIALIACGL FQTHYACCNI SYKSFTSVMY ITKVCSTLCE 240
241 SLIFIILGVM LVNEREWFWT DWHPVFSAVS VVLCVVVRFG VTFFLTYFVN Q
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1zcdA |
| Description: | Crystal structure of the Na+/H+ antiporter NhaA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [452-783] |
1 11 21 31 41 51
| | | | | |
1 FTGGVRHISF QEQFIMSYGG LRGAVSFSLV FMISANPDVK NTMLGATYAV ILFTNIIQGS 60
61 TIKLFVKWLN IRLAKKEDHF RLFIEFNNGM VQHLSQGIED LCGDKSLSLI NRMSELSKKY 120
121 VRPLLEKNYT ANKAKKEGKL VELNRAVAMR EALNNSPSQS SFQRQHTIDE MAESGALPHD 180
181 LLDEEHQGHH HHGQVHPDNE DADQRANELI KDVSSIRQLM HNPFEDCYLD RNLTHEEEKE 240
241 QARLKMKKTR AFKFSSVRKT IGFFGKKKSV RRHATQQGIL HSAIATIGVQ SVDRPSTSTR 300
301 VSVEDEEQGL TMKEMEEEHP LMTITESEET SF
|
| Detection Method: | |
| Confidence: | 8.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
