| Protein: | mod-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mod-1.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..30] | [471..101] |
|
Region A: Residues: [1-347] |
1 11 21 31 41 51
| | | | | |
1 MKFIPEITLL LLLFVHSTQA KGKRRKCPEG AWSEGKIMNT IMSNYTKMLP DAEDSVQVNI 60
61 EIHVQDMGSL NEISSDFEID ILFTQLWHDS ALSFAHLPAC KRNITMETRL LPKIWSPNTC 120
121 MINSKRTTVH ASPSENVMVI LYENGTVWIN HRLSVKSPCN LDLRQFPFDT QTCILIFESY 180
181 SHNSEEVELH WMEEAVTLMK PIQLPDFDMV HYSTKKETLL YPNGYWDQLQ VTFTFKRRYG 240
241 FYIIQAYVPT YLTIIVSWVS FCMEPKALPA RTTVGISSLL ALTFQFGNIL KNLPRVSYVK 300
301 AMDVWMLGCI SFVFGTMVEL AFVCYISRCQ NSVRNAERRR ERMRNSQ
|
| Detection Method: |  |
| Confidence: | 67.154902 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-475] |
1 11 21 31 41 51
| | | | | |
1 VWANGSCRTR SNGYANGGSV ISHYHPTSNG NGNNNRHDTP QVTGRGSLHR NGPPSPLNLQ 60
61 MTTFDSEIPL TFDQMRSTSP PPPSGCLARF HPEAVDKFSI VAFPLAFTMF NLVYWWHYLS 120
121 QTFDQNYQ
|
| Detection Method: | |
| Confidence: | 31.0 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
