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View Structure Prediction Details

Protein: che-13
Organism: Caenorhabditis elegans
Length: 412 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for che-13.

Description E-value Query
Range
Subject
Range
gi|74002603 - gi|74002603|ref|XP_535730.2| PREDICTED: similar to huntingtin-interacting protein-1 protein interact...
266.0 [0..6] [412..155]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEHEEESH LSQSDTVGSA IVEDGPGKEY EIYIKNEELV DKLKLLNYED GFLKLGVVYK  60
   61 PILKHYFVKS KNVGEQFFLF TSLAAWLIKK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGDESYNMPQ EFDDPNSTLA NIMAAAKNKG IATDFTAAKL KSGAGENVIF ILNSLADASL  60
   61 VHVGFQWQKM IPPKEEDEDT AVDEQDEDDD NDDIVEEPMN FLDDDDDDNV IEIDLKAQGL 120
  121 ATESKNPLQS VLQSNTDAIT WKQEVERVAP QLKITLKQDA KDWRLHLEQM NSMHKNVEQK 180
  181 VGNVGPYLDN MSKDIAKALE RIASREKSLN SQLASMMSKF RRATDTRAEL REKYKAASVG 240
  241 VSSRTETLDR ISDDIEQLKQ QIEEQGAKSS DGAPLVKIKQ AVSKLEEELQ TMNVQIGVFE 300
  301 QSILNTYLRD HFNFSANLLN IM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle