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View Structure Prediction Details

Protein: nhx-5
Organism: Caenorhabditis elegans
Length: 611 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-5.

Description E-value Query
Range
Subject
Range
gi|109132388 - gi|109132388|ref|XP_001101536.1| PREDICTED: similar to solute carrier family 9 (sodium/hydrogen exch...
390.0 [0..1] [611..25]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLWTISTI LLISSTVAGS NNGNTRLDMA AQRRASNIHR MDTIILLTYV SVMVLIVVTA  60
   61 WAFKHYRFRF IHESGVTLFY GLLIGFVIRY FGLGLLQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTFDVITKNK TIVKEPPDYL MLEVKPEGGS RVSFHYELIE GFFADKRKKI EQQIEQKSVF  60
   61 SPEVFFNMLI PPIIFNAGYS LKKRHFFRNI GSILAIVFIG TTISCFGTGC LMFVFTSIFQ 120
  121 MGYSFKELLF FGALISATDP VTIISVFNDM NVEADLFALI FGESALNDAV AIVLSEVIEN 180
  181 FSTSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [284-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAITLQDFGS AIAGFAGVFF GSLMLGFMIG CMNAFLTKMT LISEHALLES SLFVLISYIS  60
   61 FLVAEVCGLT GIVSVLFCGI AQAHYTYNNL SDESQSNTKH FFHMVSFIME SFIFCYIGVS 120
  121 VFVTNNQRWS FSFLLFSLIS ITASRALFVY PLSWLLNIRR RPKIPKRYQH MILFAGLRGA 180
  181 MAFALAGRNT STENRQMIFA TTTAVVIVTV LVNGGLTSWM IDYLQIKHGK DAIEEGQRLE 240
  241 NSMSSSPADQ HSDLDESVPV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [544-611]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMSPGLNPWD KAFLPRKWYH FDASFMKPLL THATPSLEQT LPPFCLPLTS LLTSSRQRAG  60
   61 ETSSFDCE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle