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View Structure Prediction Details

Protein: rcn-1
Organism: Caenorhabditis elegans
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rcn-1.

Description E-value Query
Range
Subject
Range
gi|113911991 - gi|113911991|gb|AAI22720.1| RCAN2 protein [Bos taurus]
306.0 [0..12] [204..39]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADNSEKST KSVANGSLIS TVSSKDDLPN AIIVTQVPED VFDNKQDKAN FSSLFTQIEK  60
   61 DIHFDFLRSF RRVRVIFSSP ENATAAKLIV QGFSFKGHEL KAFFAQRIYM SANSQMLSPP 120
  121 PLEKQFLISP PCSPPVGWEQ TKDMPPVVCN FDLMARLASF AIDEKYEVHN GDELTPAIIV 180
  181 HPCETPIDVP SAIEMPRTPR PSSPCEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.30103
Match: 1weyA
Description: Solution structure of RRM domain in calcipressin 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.30438455421982 bayes_pls_golite062009
nucleic acid binding 1.56594485731437 bayes_pls_golite062009
protein binding 0.403675976995418 bayes_pls_golite062009
RNA binding 0.299180957062386 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle