| Protein: | twk-16 |
| Organism: | Caenorhabditis elegans |
| Length: | 555 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twk-16.
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..17] | [555..13] |
|
Region A: Residues: [1-368] |
1 11 21 31 41 51
| | | | | |
1 MMFILQQLLR FFRLKNFEHA KPFTLHCSLL MLVLLYSFLG GFIFDRIETN AHAEMKRNER 60
61 INRTACVSQI LHSIHRWSHN QTHKVQYAED IADCFEPEKD ERSEWNFVTA TLYGFGIVTT 120
121 LGYNRIAPIT YTGRMFCIVY GICGIPVTMI IIANVGQYLN NFAGDSRRKI EAYRQQRRMS 180
181 KASLAGKIYK ESSIQVTSLA LLCVFLIYVA VGALLLPLLN GELDFFNGLY FNFLCLTAID 240
241 FGQLVPIRVE LLPITFLYVC IGLAITTIAI NIGSEYMKKL HYWGKKMKNA AQTRIWFGGK 300
301 TLKVRDLLHA VGKKCGVEPG MIDALDLENV VERTIAMQEG REPPEDLNDE PPREPSPRSI 360
361 IHSPCSTR
|
| Detection Method: |  |
| Confidence: | 39.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [369-555] |
1 11 21 31 41 51
| | | | | |
1 PSNPPMSPPS PREDHPFIFK MDAPAPRSPL PLPAYELDIK KPIFQALSNE FMNQSAQEKL 60
61 FNDLDTFQIE INTELVEDHK CESVIIIEPP ATFEDMTIQH SLCVEDYERE EKVPKRFREK 120
121 KEMYGRDPRK LYETYQEEWD RLERLSDRKH GPRRKSVLNL SNCSPERSVS PSPIRHSLTG 180
181 EGHRRDS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
