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View Structure Prediction Details

Protein: paa-1
Organism: Caenorhabditis elegans
Length: 590 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for paa-1.

Description E-value Query
Range
Subject
Range
2AAB_RAT - Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicu...
390.0 [0..3] [590..13]

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Predicted Domain #1
Region A:
Residues: [1-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVEEATDD ALYPIAVLID ELRNEDVTLR LNSIRKLSTI ALALGVERTR NELIQFLTDT  60
   61 IYDEDEVLLV LAEQLGNFTP LVGGPDHVHC LLLPLENLAT VEETVVRDKA VESLRKIADK 120
  121 HSSASLEEHF VPMLRRLATG DWFTSRTSAC GLFSVVYPRV SPAIKSELKS MFRTLCRDDT 180
  181 PMVRRAAAAK LGEFAKVFEK TAVIEGLHSS LTDLHVDEQD SVRLLTVESA IAFGTLLDKA 240
  241 NKKKLIEPIL IELFDDKSWR VRYMVAEKLI EIQNVLGEDM DTTHLVNMYT NLLKDPEGEV 300
  301 RCAATQRLQE FALNLPEDKR QNIICNSLLN VAKELVTDGN QLVKSELAGV IMGLAPLIGK 360
  361 EQTVSELLPI YMQLLNDQTP EVRLNIISSL DKVNEVIGAA QLSTSLLPAI VGLAEDGKWR 420
  421 VRLAIVQFMP LLASQLGQEF FDEKLLPLCL NWLTDHVFSI REASTLIMKE LTQKFGGQWA 480
  481 STNIVPKMQK LQKDTNYLQR MTCLFCLNTL SEAMTQEQIL KEIMPIVKDL VEDDVPNVRF 540
  541 NAAKSLKRIG KNLTPSTLTS EVKPLLEKLG KDSDFDVRYF SEEAKNSLGL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 108.0
Match: 2iaeA
Description: No description for 2iaeA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle