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View Structure Prediction Details

Protein: sand-1
Organism: Caenorhabditis elegans
Length: 459 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sand-1.

Description E-value Query
Range
Subject
Range
gi|114586954 - gi|114586954|ref|XP_001166744.1| PREDICTED: MON1 homolog A isoform 4 [Pan troglodytes]
574.0 [0..2] [459..207]

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Predicted Domain #1
Region A:
Residues: [1-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEVPGGSE AADTGSEASY KVSQVEIEDV EENLKNADVI FEHLEQLPFQ VFILSEFGKP  60
   61 IFVNNDRNEG EIVSLVALIC AFVSRCQSWG DSLMTMTSQD NHIQFLHKSP LIFCVVSKYP 120
  121 EQLDQQLEVL FEQICSILSK SQLENVYKKK GDNYDLRKLL RGTDRLIDSS ISSWRASPIN 180
  181 LVDSSISAIP MNPSDREFLS TTMASCLGAA KLDGALFGIM IARRQIAAMV RFKKYMIHPR 240
  241 DLNIVINLVS D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 2hf6A
Description: No description for 2hf6A was found.

Predicted Domain #2
Region A:
Residues: [252-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTLQTDSQNW VPICLPRFND TGFFYAYISY PWCNKEQDIP VCIVLLSVKR DHFDGLKEVR  60
   61 QQIVTKLENN QKFFVNFAQA MKTPNLYQIS QIGSNSESLW SFLYLNHSSK QVCMSASKIP 120
  121 LITRDERWIA RSEMRRSSSL SSLHPHLRTL FVRGTKHCLF VWVTDLFSLY CIFGPFVTAT 180
  181 IAFQVVEKLL KSLKSHEQRY FIINSTSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle