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View Structure Prediction Details

Protein: glr-6
Organism: Caenorhabditis elegans
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glr-6.

Description E-value Query
Range
Subject
Range
gi|56800448 - gi|56800448|emb|CAI35291.1| glutamate receptor, ionotropic, AMPA1 (alpha 1) [Mus musculus]
276.0 [0..3] [325..302]

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Predicted Domain #1
Region A:
Residues: [1-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGSPFIK IEYFIEYSII FSVWTFSAIA TVITALLVTV AAVLSPKEST AEFKIQNSVW  60
   61 YLVCILLRAG SGYNCQAGAT RLISAVWWSF TLVLIAQYTA NFAALLTVDR KSMPFNSFEE 120
  121 LGNQTEYNFG SILGGSTMQF FKYSRIETFR RLWERMQSAE PSAFVGTNHE GVNRVLNEKY 180
  181 VFLMESATLD YQVTQNCNLT RVGNVVLGSN GYSIALPKGS KWREKLTRQI LDLNEKGIIL 240
  241 MLKNNWWKKS QQECQSSEPE DLQTALGAEN VYGLFLLLAL GSGIGVLCAV LEHTHFIFFE 300
  301 KNKRNGQTPK LQQMIETIHA EIRNSPKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1txfA
Description: CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE IN COMPLEX WITH GLUTAMATE AT 2.1 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle