YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-21
Organism:	Caenorhabditis elegans
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-21.

Description	E-value	Query Range	Subject Range
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	173.0	[0..1]	[83..79]
gi\|7500711 - gi\|7500711\|pir\|\|T28840 hypothetical protein F37C12.11 - Caenorhabditis elegans	168.0	[0..1]	[88..64]
gi\|73992422 - gi\|73992422\|ref\|XP_543084.2\| PREDICTED: similar to ribosomal protein S21 isoform 1 [Canis familiaris... RS21_BOVIN - 40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1 RPS21 - ribosomal protein S21 gi\|114685480, gi... - gi\|114685480\|ref\|XP_514766.2\| PREDICTED: similar to ribosomal protein S21 isoform 3 [Pan troglodytes... ENSCJAT00000027617 - null RS21_PIG - 40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=1 SV=1	164.0	[0..1]	[83..1]
gi\|109091379 - gi\|109091379\|ref\|XP_001088137.1\| PREDICTED: similar to ribosomal protein S21 [Macaca mulatta]	163.0	[0..1]	[83..1]
gi\|61369987 - gi\|61369987\|gb\|AAX43423.1\| ribosomal protein S21 [synthetic construct]	162.0	[0..1]	[82..1]
gi\|73992252 - gi\|73992252\|ref\|XP_852526.1\| PREDICTED: similar to ribosomal protein S21 [Canis familiaris]	161.0	[0..1]	[83..33]
RS21_CAEBR - 40S ribosomal protein S21 OS=Caenorhabditis briggsae GN=rps21 PE=3 SV=1 gi\|157774883 - gi\|157774883\|ref\|XP_001665507.1\| hypothetical protein CBG16614 [Caenorhabditis briggsae AF16]	160.0	[0..1]	[88..1]
RS21_MOUSE - 40S ribosomal protein S21 OS=Mus musculus GN=Rps21 PE=1 SV=1	160.0	[0..1]	[83..1]
RS21_RAT - 40S ribosomal protein S21 OS=Rattus norvegicus GN=Rps21 PE=1 SV=1	159.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNDAGQTVE LYVPRKCSSS NRIIGPKDHA SVQIDFVDVD PETGRMIPGK STRYAICGAI  60
   61 RRMGESDDAI LRLAQKDGLV PRDDVKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.124939
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.640	N/A	N/A	a.77.1	DEATH domain
View	Download	0.600	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.540	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.536	N/A	N/A	a.77.1	DEATH domain
View	Download	0.536	N/A	N/A	a.77.1	DEATH domain
View	Download	0.485	N/A	N/A	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.485	N/A	N/A	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.472	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.450	N/A	N/A	a.77.1	DEATH domain
View	Download	0.268	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.217	N/A	N/A	d.76.2	Description not found.
View	Download	0.209	N/A	N/A	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.203	N/A	N/A	d.68.8	Description not found.
View	Download	0.202	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits