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View Structure Prediction Details

Protein: mlcd-1
Organism: Caenorhabditis elegans
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mlcd-1.

Description E-value Query
Range
Subject
Range
gi|58534495, gi|... - gi|58698990|ref|ZP_00373842.1| malonyl-CoA decarboxylase, putative [Wolbachia endosymbiont of Drosop...
gi|225630116, gi... - gi|225630116|ref|YP_002726907.1| Malonyl-CoA decarboxylase [Wolbachia sp. wRi], gi|225592097|gb|ACN9...
585.0 [0..12] [442..49]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRYSHFYS IRYSSTLLST LDGLTNRTSG DKLLTYSEKF SKLYANSTPE TRKSIFVDLV  60
   61 TNYGVNKEAL NHAISLYSKN DQMYPEVRTS ATASYVNLIK SIGNLPGGVM QVCEMRANIL 120
  121 ALLKRETDKT TTSYLRHIEL ATREVLTSW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSLGNLKLER LTWSSPGDIL QKVAEYEAVH PVRGLSDFRK RLGPLRRCFY FSHEALPRNP  60
   61 LVMVHVALVD EIADSVQEIT KRGAPTGKEE DQTTAIYYSI TSTQPGLSGI DLGNMLIKKV 120
  121 ATKLQKDVPS VTTHSTLSPI PGFRPWLIRN LKGNSEYPSI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKVVNWIS DISEREMNEV EATETLLKVI SNEKTKKEQL NAIQHILMYA CAHYLCNAKR  60
   61 NGMALNSVAN FHIRNGAELY RLNWNGDTSH RGINNSFGIM VNYRYDLEKV HENSAAYTEH 120
  121 KKMAINQKVL DIF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle