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View Structure Prediction Details

Protein: CE31442
Organism: Caenorhabditis elegans
Length: 537 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31442.

Description E-value Query
Range
Subject
Range
gi|93353795, gi|... - gi|94309943|ref|YP_583153.1| DNA repair protein RecN [Ralstonia metallidurans CH34], gi|93353795|gb|...
215.0 [0..7] [535..1]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYPQQRLLT VDILNFKCYQ HHKSFGPFDH VTTFIGMNGC GKSIMIEAIA FVFGEDLPDP  60
   61 KNPHNEHLFY DYNIRCVVSL KFEMPDGSTK RFTRIGLKTT YTYMIFNKYV TEEEYLLELG 120
  121 KMNFRFAGQN ISVYNKTTLK VTRKSAEELG AFFDIVSNSI EFKPEYDELK AKLNFAESTV 180
  181 LRWAKMIDSI ELEKEKFITL TLYKLYLCDK EIQETKEKFV AEQLKVNAKN AKMPLRISRY 240
  241 SEAIPKQTPS PNFKNNAIVV RPKTHNHYDN LITVDKLNSY LNEKVTERRE LLQFAVNHPN 300
  301 MNIRFSEEGP NIYAREI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1w1wA
Description: Sc Smc1hd:Scc1-C complex, ATPgS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [318-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYTELPEYYK KESDDIIATS YKRSMLEKEI KKIRQCWLDE NNIKDDANID NINMRIKEAT  60
   61 TKH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [381-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLALNIESEA RLNWEKLRVM RSARFNNFMA PLQTSLSRIY AEIAQDEDSL AFLRPLDEEE  60
   61 PYLAIDAFVK ERHSEHISTR TFHGGSRMIV DLALIFAIHE WKPSPLVVID DIDRNLYHEA 120
  121 SKKIEPYLSR QKQTQFIVTT KEDSYFTEVT KTITLEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.09691
Match: 2hydA
Description: No description for 2hydA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle