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View Structure Prediction Details

Protein: inx-1
Organism: Caenorhabditis elegans
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-1.

Description E-value Query
Range
Subject
Range
gi|39586782, gi|... - gi|39586782|emb|CAE65824.1| Hypothetical protein CBG10939 [Caenorhabditis briggsae], gi|187030706|em...
gi|157770374 - gi|157770374|ref|XP_001677007.1| Hypothetical protein CBG10939 [Caenorhabditis briggsae AF16]
533.0 [0..1] [428..66]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLYYLAAIF KGLHPRVDDD FVDKLNYHYT SAIIFAFAII VSAKQYVGYP IQCWVPAQFT  60
   61 DAWEQYTENY CWVENTYYLP LTSAFPLEYG DRRARQISYY QWVPFVLALE ALCFYIPCIM 120
  121 WRGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHWHSGINVQ SLTQMACDAR MMDADARAAT VQTIAGHMED ALEIQREVTD VSGMCVQKRW  60
   61 ANYVTLLYVF IKMLYLGNVV LQVFMLNSFL GTDNLFYGFH ILRDLLNGRE WEVSGNFPRV 120
  121 TMCDFEVRVL GNVHHHTVQC VLMINMFNEK IFLFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFWYFMVAFV SAVSMFHWII ISFLPGQHMK FIRKYLRATD LATDRQSVKK FVHKFLGYDG  60
   61 VFCMRMISAH AGDILATELI VALWHNFNDR VRKSPIEMFE GGVTQSPSKL DANFKTWLLG 120
  121 QTRGKPPFDG SNPTRGKKRR KSDGYFTFV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle