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View Structure Prediction Details

Protein: CE30862
Organism: Caenorhabditis elegans
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30862.

Description E-value Query
Range
Subject
Range
gi|39585804, gi|... - gi|39585804|emb|CAE61217.1| Hypothetical protein CBG05011 [Caenorhabditis briggsae], gi|187035275|em...
gi|157770111 - gi|157770111|ref|XP_001676876.1| Hypothetical protein CBG05011 [Caenorhabditis briggsae AF16]
254.0 [0..1] [297..1]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKKLFST AVRGKSWWSH VEMGPPDAIL GVTEAFKADS NPKKINLGVG AYRDDQGKPF  60
   61 VLPSVKEAER QVIAANLDKE YAGIVGLPEF TKLSAQLALG ENSDVIKNKR IFTTQSISGT 120
  121 GALRIGSEFL SKYAKTKVIY QPTPTWGNHV PIFKFAGVDV KQYRYYDKST CGFDETGALA 180
  181 DIAQIPEGST ILLHACAHNP TGVDPSRDQW KKISDIVKKR NLFVFFDMVN ESVLSPLLPR 240
  241 TLMRLLVLLL KSRSLFAHST PTHQSMELAL LPASSRIQLS TSNGSEMSSS WLIVSSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 1amaA
Description: DOMAIN CLOSURE IN MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.76873005093488 bayes_pls_golite062009
transferase activity 0.3093369052482 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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