| Protein: | kcnl-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 555 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kcnl-1.
| Description | E-value | Query Range |
Subject Range |
|
|
310.0 | [0..21] | [538..98] |
|
Region A: Residues: [1-376] |
1 11 21 31 41 51
| | | | | |
1 MRIFTRKTIV DTIFFFFDDS TAKMRCRLRK QLFIRRNKVC DISLFLAVLG LLLVIIDSEL 60
61 TALSSSTGIT KDSPISIILR SACVVSTFFL ICCLINYHAI EVKIALIDSG ADDWRVAFST 120
121 DRFIKMLIEV CVCMICPFPE IFSDGLMKMP YINADTRQVK MRDVPIDVLL SVPMFLRSYL 180
181 VCRFMVLHSK QFQDAATRSI AALNRISMDF RFVIKTMMAD HPLRVLIVFT LSYWMCMSWM 240
241 FTQCERYDGQ LEVEHYYLNS MWFIMVTFMS IGYGDIVPNT YCGRCLSITT GIVGAGVSSA 300
301 LIAIISRKLE LSRAEKHVNN FMADSKLTNQ RKNAAASVLQ ETWFIHKYKK ALHKGDDLRL 360
361 RHHQRRFLHS INEFRR
|
| Detection Method: |  |
| Confidence: | 47.154902 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [377-555] |
1 11 21 31 41 51
| | | | | |
1 IKWDQRKLQE KGNSLLDVGK LHSDMHETLW EMHRTQDHFI SQIDVLTQKI MELQMTLNTR 60
61 PPCCAPPTSS SNDAYFSTST QLGTVLPTVI PTIPLPPTQS PMLHASQSHR EPLQVTTTTT 120
121 TSSDGLPRIS VGSTSSTATS ASSGNGSLPQ CTVDQLSNCP TGGIYATVTT PLISNFEEV
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 2q0aA |
| Description: | No description for 2q0aA was found. |
