| Protein: | cpg-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 524 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpg-2.
| Description | E-value | Query Range |
Subject Range |
|
|
182.0 | [0..1] | [521..202] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MKTVAALTLL AFATAANGQF LQDCTNALDG LYALGECEPQ FLTCSGGIAR IMDCPADLIY 60
61 NEPLLICDWR HNVIGCEGS
|
| Detection Method: |  |
| Confidence: | 2.9 |
| Match: | 1dqcA |
| Description: | Tachycitin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.461387356230357 | bayes_pls_golite062009 |
| polysaccharide binding | 0.0417424982172556 | bayes_pls_golite062009 |
|
Region A: Residues: [80-446] |
1 11 21 31 41 51
| | | | | |
1 GESSGETSGE GSGESSGEAS GEGSGEASGE GSGEASGEGS GEASGEGSGS GEETVENVCE 60
61 NLEDGAYSSG GCTTYYFFCT TNTARFLSCP TPLFYDADSQ KCIWKSLVEE CKEDLTITDG 120
121 SGETSGEGSG EASGEASGEG SGEASGESSG QGSGEASGEG SGELEPTCEG KADGIHPNGV 180
181 CSTNFLTCSG GIARIMDCPA SLVFNPTILV CDWPRDVAEC AGLPTPQPTC EEDGYFSFGQ 240
241 CSSSFTACTN GRAIVMFCPA GLKFSESTVR CDYESNVSEC QETSGEESGE ASGEQSGEGS 300
301 GEASGEASGE SSGEGSGVEE QNQCVGLDNG LHAIGCSPRV LSCQNGHVDI FECPSSLVFN 360
361 DQSLICD
|
| Detection Method: | |
| Confidence: | 9.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.279921135544 | bayes_pls_golite062009 |
| binding | 1.20290372802439 | bayes_pls_golite062009 |
| receptor binding | 0.82821806463643 | bayes_pls_golite062009 |
|
Region A: Residues: [447-524] |
1 11 21 31 41 51
| | | | | |
1 YPQTSLKCLI EDTILIDETP IAAFDCSTDG LFSDGLCSAT YHQCTAGQLI NFTCAASNAV 60
61 FSAANTECVD SSTLLQCH
|
| Detection Method: | |
| Confidence: | 8.045757 |
| Match: | PF01607.15 |
| Description: | No description for PF01607.15 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
