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View Structure Prediction Details

Protein: taf-8
Organism: Caenorhabditis elegans
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf-8.

Description E-value Query
Range
Subject
Range
taf-8 - status:Partially_confirmed UniProt:Q7YTH5 protein_id:CAE18043.1
649.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPQHNTFIR RPTIAGRSFH PSGYSVQQFV PQQSNFQQPI SNFTQKSAES RAQKQVGANF  60
   61 LPSIVNEAYH NVLEQIVTAM CYKSGFDDIE EGALETLMLL FHSYIKRIGE QSRFACEVAG 120
  121 RTIVTPGDVW FGLVNMGIKV NQLSDFHQDQ IIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1tafA
Description: TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [154-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTVHAPEII PPEAKNQALR IGTPRPHPSY VYEWLPPLPD PHTYIKTEIS EDIDFSYEKV  60
   61 REAMSQKKRN GITSLVNYMI RNYPSICLFR NFEEIIHEQV KKTFNKESEE KRMQEAFVAF 120
  121 RDLVQTNDID EVKNVSKSLY DKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [297-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LISKHELQSG TEVLCMSSDG ALIDQFGERV YLSETTSIDL EDKDRVSKSS TRMTTCGDGA  60
   61 ESLRYHWPID EMLDELIELD SCTMDLGDEK IDEMKYMQEK TTFEYLPEWC HILIPSFEHR 120
  121 AYLTVVSDDL KAEEESKKDK DKEKDKQIGD LTEEEKKGKD EEITHENLYL CPPIRDNDYG 180
  181 NYEDEEITEE SALEVPEND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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