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View Structure Prediction Details

Protein: col-112
Organism: Caenorhabditis elegans
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-112.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
253.0 [0..45] [295..1389]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVETRVKAY RFVAYAAVTF SVVAVLSVCI TLPMVYNYVS HVKKGIHHEI RYCKGSAKDI  60
   61 LNEVSSIRSN RTARQASYGD SGAAGSAGAA GGSCSGCCLP GPAGPVGTPG KPGRPGKPGV 120
  121 AGLPGNPGRP PQAPCDPITP PPCKPCPQGP PGVQGPPGPA GDAGLDGQPG GPGQDGQPGQ 180
  181 PGPKGPPGVN GQPGAPGQDG NPGQDAPSEP LVPGEPGAPG EAGPQGPPGQ PGTPGQNGQP 240
  241 GQPGPKGPSG QPGQPGSDGN PGPAGQAGQA GSVGEKGICP KYCAIDGGIF FEDGTRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle