| Protein: | lgc-46 |
| Organism: | Caenorhabditis elegans |
| Length: | 508 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-46.
| Description | E-value | Query Range |
Subject Range |
|
|
343.0 | [0..17] | [507..56] |
|
Region A: Residues: [1-381] |
1 11 21 31 41 51
| | | | | |
1 MQYLQFLSLV VLLLMCHARK SVYRRNSPSL RRLTRNYDWE VDEHGGLKPI INPAKVERAT 60
61 KNCANDSFIL GTIMSNYNRH KIPGGQVDVE VEVWVQEITT ISDITSDFQL DIYIYETWYD 120
121 PALNYAFMNP CKYNLSLNSV LLEKLWTPNS CFINSKTADI HKSPFPNIFL MIYANGTVWT 180
181 NYRLKLQGPC IMDLTKFPFD NVTCSLTFES FNYNTDEVKM DWSVNGVQKM RDKMELADYE 240
241 LVDIHKIRTT EEYPAGYWHE LTMSFEFKRR AGWYILQAYL PTYLTICISW ISFALGSKAI 300
301 PARTMLGVNS LLAMTFQFGN IIRNLPRVSY VKAIDVWMLS CMTFVFCSLL ELAWVGYLSR 360
361 EEEPTSAKCL QPSAQVAPKP C
|
| Detection Method: |  |
| Confidence: | 67.045757 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-508] |
1 11 21 31 41 51
| | | | | |
1 HPPPVQQNAN NSSVHRRQKQ PKNEEESALL SLRDNDYGYI PPGFGLNGNV ANAMKSFSSS 60
61 CSCEPTNVVN LMLDEAETIP TSTSSSLSRK QRREILAHKI DSVSVFMFPF LFVLFNIAYW 120
121 QHYLRGY
|
| Detection Method: | |
| Confidence: | 29.30103 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
