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View Structure Prediction Details

Protein: gbb-1
Organism: Caenorhabditis elegans
Length: 498 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gbb-1.

Description E-value Query
Range
Subject
Range
gi|109460369, gi... - gi|109460369|ref|XP_001058639.1| PREDICTED: similar to vomeronasal 2, receptor, 1 isoform 1 [Rattus ...
322.0 [0..12] [496..75]

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Predicted Domain #1
Region A:
Residues: [1-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGSGGWAG GEACLPAVEM ALKDVNSRLD ILPGYVLNMT NHNSQCQPGL AMQQLYDFLY  60
   61 KPPTKLMLLT GCSPVTTVIA EAAPVWKLVV LSYGGSSPAL SNRNRFPTLF RTHPSANMQN 120
  121 PTRIHIMEKF KWKRFTILMS VEEVFVTTAK DLEAIARKKG IKVDRQSFYG DPTDAMKTLQ 180
  181 RQDARIIVGL FYVTEARKVL CQAYHHGLYG RRYVWFFIGW YADTWYIPPP EEHLNCTAEQ 240
  241 MTEAAEYHFT TESVMLSRDN IPAISEMTGM QFQQRLTQYF QKDTANVGGF PEAPLAYDAV 300
  301 WALALAFNCT RNNLPSHIRL ENFTYDNKVI ADTLFQCVKN TSFRGVSGKV MFSDSGDRIA 360
  361 RTQIEQMQGG KYKIMGYYDT TSGDLEWYNK EQWLNGKGPP PDSTVIKKHA MTVSNEFYYP 420
  421 TILFAVLGIA ACVFIYLFTQ KHHERLIIFQ SQPECNNILL IGCSLCLFSL FLIGLPSDDI 480
  481 SISESLFPLL CHVSQTFR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.045757
Match: 2e4uA
Description: No description for 2e4uA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle