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View Structure Prediction Details

Protein: CE29996
Organism: Caenorhabditis elegans
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29996.

Description E-value Query
Range
Subject
Range
gi|39583654, gi|... - gi|39583654|emb|CAE63758.1| Hypothetical protein CBG08293 [Caenorhabditis briggsae], gi|187032671|em...
gi|157758491 - gi|157758491|ref|XP_001671589.1| Hypothetical protein CBG08293 [Caenorhabditis briggsae AF16]
183.0 [0..8] [102..6]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSDARGHQ VEADFARLGV RIELPDKRPF PIDQFELFVH EAIREVFGSC GPIVKISEYD  60
   61 SDLRRGSIVA PGNEIQQVWA ALTTKGSFQG RRIAAHLHTL TETPVTNIV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.18
Match: 2av5A
Description: Crystal structure of Pyrococcus furiosus Pop5, an archaeal Ribonuclease P protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle