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View Structure Prediction Details

Protein: sbds-1
Organism: Caenorhabditis elegans
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sbds-1.

Description E-value Query
Range
Subject
Range
gi|47221046 - gi|47221046|emb|CAG12740.1| unnamed protein product [Tetraodon nigroviridis]
331.0 [0..4] [252..2]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNIKTPTN QKVLTNVAVV RMKKTGKRFE IACYKNKVVN WRNKSEKDID EVLQTHTVFS  60
   61 NVSKGQLSKK EELIAAFGIE DQLEICKIIL DKGDLQVSEK ERQAASDQSL KEVSQLIASM 120
  121 VVNPETKRPV PPSVIDKALQ EMHFSLKPNR SSKQQALDAI PKLRETLKIE RAKMKIRVAI 180
  181 PTKEAKSVHT KLKTLFSDVE VDDWQDGSLE MVGLIEPGSF RALDDLVRNE TKGHGRLEIL 240
  241 SLKDVVEGEL QIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.221849
Match: 1p9qC
Description: Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle