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View Structure Prediction Details

Protein: jph-1
Organism: Caenorhabditis elegans
Length: 747 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jph-1.

Description E-value Query
Range
Subject
Range
gi|15149558 - gi|15149558|dbj|BAB62876.1| junctophilin [Caenorhabditis elegans]
473.0 [0..1] [747..1]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGRFDFDD GGTYVGGWEE GKAHGHGVCT GPQAKGEYAG AWHYGFEVSG VYTWPS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.23
Match: 1n6cA
Description: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain; Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [57-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNTYQGQWQN GKRHGLGIEQ RGRWLYKGEW TQGYKGRYGV RQSANSQARY QGTWSAGFHD  60
   61 GYGTEIYVDS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1h3iA
Description: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain; Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [127-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSYQGQWLRG MRHGYGIRKS TTYEKAAKFR SKSQTHASLT SLRSGRVEEE NAAEEHRHKE  60
   61 GLSGRGGFVL RANSSAPQRR RRSLSERSLA VKRTLLSGLR IKKQHSTGDI HQRVASMTGS 120
  121 LRSSGSTMSC TSEDSLHHHG LQQPEEEAVE ESSIETYMGE WKNDMRSGFG VCERSDGLKY 180
  181 QGEWANNAKC GYGVTTFKDG TKEEGRYKNN ILIASSRRKG VIFMRASKFR EKLEQALGAA 240
  241 SRAASIAQQK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 2bibA
Description: Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [377-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADIAASRTST ARERSEQASF IARQANDDSE VARIHAKQFD PSFKQPGTRR LLKDNNGGES  60
   61 FGTDLSDAIS YSRHLSQTHS KQHSFEQTLS VDMAEDMTPP SKAYHNHVMP NSNTNHVNFM 120
  121 PQYGYSDPNS QLQTPINSQD LLQPHIPNID PSIPSVSIVQ DDEKPLILQP QTNISQPGPS 180
  181 NLSTQAPNVM SSRFSLSDDH YDQYVMAGGA QQQQKLRRNR PSLMR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [602-747]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QADVNESCAA SGLNRRSTLA SARDRNGDVN HPGAIGATHA AKLTAATSDG DNMGSLPNLA  60
   61 ELETQGVRLR REEAARLAGQ RRQEVLRENE EAALLRANPL RHFLQPAFRA WLVRWRIPIL 120
  121 LAIANISLLM LFYHLLTYEK KKKSSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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