YRC Public Data Repository - Protein Structure Prediction

Protein:	CE29987
Organism:	Caenorhabditis elegans
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29987.

Description	E-value	Query Range	Subject Range
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	382.0	[0..1]	[318..1]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNIKVFSGS SHPDLSTRIC ERLQLEVSKA SLKKFSNKET NVEIGESVRG EDVYIIQSAA  60
   61 GEINDNLMEL LIMINACKIA SSCRVAAVIP AFPYARQDKK DKSRAPISAK LVANMLSVAG 120
  121 ADHIITMDLH ASQIQGFFDI PVDNLYAEPA ILKYIKESIP NWQTSVIVSP DAGGAKRVTS 180
  181 IADRLNVDFA LIHKESKRAN EVEKMTLVGS VEGKVAILVD DMADTCGTIC MAADKLVEAG 240
  241 ADKVYAFCVH GIFSGPALTR LNASKFEAVV VTNTIPQDEN MKKCSKIQCI DISMILAEAI 300
  301 RRTHNGESVS YLFSHVPIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits