| Protein: | cup-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 644 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cup-5.
| Description | E-value | Query Range |
Subject Range |
|
|
456.0 | [0..18] | [611..264] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR RHLQFFFMNP 60
61 MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR HRFLKEWNDD 120
121 RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIRNDSF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-644] |
1 11 21 31 41 51
| | | | | |
1 ASFSYDVVSH PSGNLGAQIS FESIPPIEVL IDRISNVTVN NNTYNFDIRE VKDTKRLNLT 60
61 ETEVFQIGQS DDAVRDILAT RGITFLPEDA LKISTVQFKF RLRTIHYSPT AGDQKPECYK 120
121 ISVSIKFDNS RHTGQVHVTL STVVSYVNVC NGRIIKGVGW SFDTLLIGGT DIFVLILCIL 180
181 SLILCCRALI KAHLLQIKTS DYFENVLKNK ITVTDQLDFL NLWYVMIVVN DALIIIGTVA 240
241 KISIEFQFNK NTFTTRNDFD NSLFTLTSIF LGMGALLVYV GVLRYFGFFS QYNILMLTLK 300
301 RSAPNIMRFM TCAIVLYAGF LIAGWVIIGP YSMKFRTLAE SSEALFSLLN GDDMFATFYT 360
361 INDSNTVIKV FGTVYIYLFV SLFIYVVLSL FIAIIMDAYE VVKDRYSDGL RAIEKRGCLR 420
421 DFVESNPPPS ELGSPTTRSA YAPSNLLNLG RCVPVEVTRI FLCSGFLHTF SFFLHLCTPN 480
481 KLGC
|
| Detection Method: | |
| Confidence: | 43.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
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