| Protein: | cup-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cup-5.
| Description | E-value | Query Range |
Subject Range |
|
|
452.0 | [0..18] | [605..264] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR RHLQFFFMNP 60
61 MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR HRFLKEWNDD 120
121 RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [155-611] |
1 11 21 31 41 51
| | | | | |
1 IRNDSFASFS YDVVSHPSGN LGAQISFESI PPIEVLIDRI SNVTVNNNTY NFDIREVKDT 60
61 KRLNLTETEV FQIGQSDDAV RDILATRGIT FLPEDALKIS TVQFKFRLRT IHYSPTAGDQ 120
121 KPECYKISVS IKFDNSRHTG QVHVTLSTVV SYVNVCNGRI IKGQVSGVGW SFDTLLIGGT 180
181 DIFVLILCIL SLILCCRALI KAHLLQIKTS DYFENVLKNK ITVTDQLDFL NLWYVMIVVN 240
241 DALIIIGTVA KISIEFQDFD NSLFTLTSIF LGMGALLVYV GVLRYFGFFS QYNILMLTLK 300
301 RSAPNIMRFM TCAIVLYAGF LIAGWVIIGP YSMKFRTLAE SSEALFSLLN GDDMFATFYT 360
361 INDSNTVIKV FGTVYIYLFV SLFIYVVLSL FIAIIMDAYE VVKDRYSDGL RAIEKRGCLR 420
421 DFVESNPPPS ELGSPTTRSA YAPSNLLNLG RGWQRLE
|
| Detection Method: | |
| Confidence: | 46.69897 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
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