| Protein: | CE30102 |
| Organism: | Caenorhabditis elegans |
| Length: | 588 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30102.
| Description | E-value | Query Range |
Subject Range |
|
|
489.0 | [0..1] | [578..1] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MSQSEEQNKD IPSSSNFGNP ANNGVNVPDA PARRLFDNTS DESDVSLDND DKTGAETDGS 60
61 SSSRGCLKSE RSRKDHASTS STRTVRAPQQ VSWSFGAKPA TPHSQPPAGL KKVPAYSATS 120
121 SSSQAGPSAS TSTARKSSLV GGRGSASSSG HTSPSPSESP ARNAGCSSSG ESNPDRSLTT 180
181 P
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [182-428] |
1 11 21 31 41 51
| | | | | |
1 PLAPALKHSA KDGHYRGQRS MSLGGPAHEM LMSQLGGRQG NTVDCSPGEG DKVCLLVDQT 60
61 RFLVSQRLLT SKPDTMLGRM FSMRASCGDL GADLVSPNER DEFEVADGMT SSCFRAILDY 120
121 YQSGTMRCPS SVSVSELREA CDYLLVPFNA QTVKCQNLHA LLHELSNEGA REQFSQFLEE 180
181 IILPQLVAST EHGERECHLV VLLDDDVVDW DDEYPPQMGE ETTHVVYSTH LYKFFKYAEN 240
241 RDCAKQV
|
| Detection Method: | |
| Confidence: | 48.0 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [429-588] |
1 11 21 31 41 51
| | | | | |
1 LKERGLKKIR LGMEGYPTHK EKIKKRFNKA EVIYNYVQRP FVHCSWEKEE ARSRHVDFAC 60
61 PIVKSKSNPS LAAAASDPLP QPAPLQQQHR VAVFGEAAPL AAHNRVDDQH FVQPLNQLMQ 120
121 QQAQLPQNNA MLGVNVQQQQ HNHPLHSPPV NFQRNDREEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
